| Identifier | Protein names | Gene names | Cross reference refseq | Length | Species |
| Q08DY8 | Autophagy-related protein 13; | ATG13; | NP_001070280.1;XP_005216493.1; | 480 | cow |
| Q0VCL3 | Ubiquitin-like-conjugating enzyme ATG3; EC 6.3.2.-; Autophagy-related protein 3; APG3-like; | ATG3; | NP_001068832.1; | 314 | cow |
| Q6PZ05 | Cysteine protease ATG4A; EC 3.4.22.-; Autophagy-related cysteine endopeptidase 2A; Autophagin-2A; Autophagy-related protein 4 homolog A; bAut2A; | ATG4A; APG4A AUT2A; | NP_001001171.1; | 398 | cow |
| Q6PZ03 | Cysteine protease ATG4B; EC 3.4.22.-; Autophagy-related cysteine endopeptidase 2B; Autophagin-2B; Autophagy-related protein 4 homolog B; bAut2B; | ATG4B; APG4B AUT2B; | NP_001001170.1; | 393 | cow |
| Q3MQ24 | Autophagy protein 5; | ATG5; | NP_001029751.2; | 275 | cow |
| Q3T904 | Autophagy-related protein 9A; APG9-like 1; Autophagy protein 9; | ATG9A; ATG9; | NP_001029878.1;XP_005202921.1;XP_005202922.1;XP_005202923.1; | 839 | cow |
| Q2HJE0 | Autophagy-related protein 101; | ATG101; | NP_001039599.1;XP_005206266.1;XP_005206267.1; | 218 | cow |
| P01096 | ATPase inhibitor, mitochondrial; Inhibitor of F(1)F(o)-ATPase; IF(1); IF1; | ATPIF1; ATPI; | NP_787010.1; | 109 | cow |
| Q58D72 | Atlastin-1; EC 3.6.5.-; | ATL1; | NP_001029803.1;XP_005211757.1; | 558 | cow |
| Q04645 | Sodium/potassium-transporting ATPase subunit gamma; Na(+)/K(+) ATPase subunit gamma; FXYD domain-containing ion transport regulator 2; Sodium pump gamma chain; | FXYD2; ATP1C ATP1G1; | NULL | 58 | cow |
| Q3T0E0 | Copper transport protein ATOX1; Metal transport protein ATX1; | ATOX1; | NP_001124230.1;XP_005209705.1; | 68 | cow |
| P05632 | ATP synthase subunit epsilon, mitochondrial; ATPase subunit epsilon; | ATP5E; | NP_001137213.1;XP_001250629.4;XP_002697025.2;XP_005193391.1;XP_005196491.1; | 51 | cow |
| P13620 | ATP synthase subunit d, mitochondrial; ATPase subunit d; | ATP5H; | NP_777149.1;XP_005221202.1;XP_005221203.1; | 161 | cow |
| Q00361 | ATP synthase subunit e, mitochondrial; ATPase subunit e; | ATP5I; | NP_788812.1; | 71 | cow |
| P02721 | ATP synthase-coupling factor 6, mitochondrial; ATPase subunit F6; | ATP5J; | NP_777142.1;XP_005201201.1;XP_005201202.1;XP_005201203.1; | 108 | cow |
| Q28852 | ATP synthase subunit g, mitochondrial; ATPase subunit g; | ATP5L; | NP_001019721.4;XP_003585176.1; | 103 | cow |
| P22027 | ATP synthase subunit s, mitochondrial; ATP synthase-coupling factor B; FB; Mitochondrial ATP synthase regulatory component factor B; | ATP5S; ATPW; | NP_001007813.1; | 200 | cow |
| P00847 | ATP synthase subunit a; F-ATPase protein 6; | MT-ATP6; ATP6 ATPASE6 MTATP6; | YP_209210.1; | 226 | cow |
| P03929 | ATP synthase protein 8; A6L; F-ATPase subunit 8; | MT-ATP8; ATP8 ATPASE8 MTATP8; | YP_209209.1; | 66 | cow |
| A1A4J6 | Probable phospholipid-transporting ATPase IIB; EC 3.6.3.1; ATPase class II type 9B; | ATP9B; | NP_001073724.1; | 1136 | cow |
