| Identifier | Protein names | Gene names | Cross reference refseq | Length | Species |
| P75893 | FMN reductase (NADH) RutF; EC 1.5.1.42; FMN reductase; NADH-flavin reductase RutF; NADH:flavin oxidoreductase; | rutF; ycdH; b1007 JW5138; | NP_415527.4;YP_489280.1; | 164 | escherichia-coli |
| P0ACU2 | HTH-type transcriptional regulator RutR; Rut operon repressor; | rutR; ycdC; b1013 JW0998; | NP_415533.1;YP_489286.1; | 212 | escherichia-coli |
| P75892 | Putative pyrimidine permease RutG; | rutG; ycdG; b1006 JW5137; | NP_415526.4;YP_489279.1; | 442 | escherichia-coli |
| P0A809 | Holliday junction ATP-dependent DNA helicase RuvA; EC 3.6.4.12; | ruvA; b1861 JW1850; | NP_416375.1;YP_490123.1; | 203 | escherichia-coli |
| P0A812 | Holliday junction ATP-dependent DNA helicase RuvB; EC 3.6.4.12; | ruvB; b1860 JW1849; | NP_416374.1;YP_490122.1; | 336 | escherichia-coli |
| P0A814 | Crossover junction endodeoxyribonuclease RuvC; EC 3.1.22.4; Holliday junction nuclease RuvC; Holliday junction resolvase RuvC; | ruvC; b1863 JW1852; | NP_416377.1;YP_490125.1; | 173 | escherichia-coli |
| P0A8I1 | Putative Holliday junction resolvase; EC 3.1.-.-; | yqgF; b2949 JW2916; | NP_417424.1;YP_491148.1; | 138 | escherichia-coli |
| P58041 | Spanin from lambdoid prophage DLP12, outer membrane subunit; o-spanin; Outer membrane lipoprotein Rz1 from lambdoid prophage DLP12; | rzoD; b4510 JW5080; | YP_488844.1;YP_588440.1; | 60 | escherichia-coli |
| P75719 | Putative Rz endopeptidase from lambdoid prophage DLP12; EC 3.4.-.-; | rzpD; ybcT; b0556 JW5079; | NP_415088.1;YP_488843.1; | 153 | escherichia-coli |
| P77551 | Putative Rz endopeptidase from lambdoid prophage Rac; EC 3.4.-.-; Fragment; | rzpR; b1362 JW5212; | YP_489633.1; | 147 | escherichia-coli |
| C1P601 | Putative lipoprotein RzoQ; | rzoQ; b4689 JW1545.1; | YP_002791241.1; | 84 | escherichia-coli |
| P58042 | Spanin from lambdoid prophage Rac, outer membrane subunit; o-spanin; Outer membrane lipoprotein Rz1 from lambdoid prophage Rac; | rzoR; b4528 JW5213; | YP_489634.1;YP_588452.1; | 61 | escherichia-coli |
| P76158 | Uncharacterized protein RzpQ; | rzpQ; ydfP; b1553 JW1545; | NP_416071.1;YP_489817.1; | 165 | escherichia-coli |
| P76149 | Succinate semialdehyde dehydrogenase [NAD(P)+] Sad; SSADH; SSDH; EC 1.2.1.16; | sad; yneI; b1525 JW5247; | NP_416042.2;YP_489788.1; | 462 | escherichia-coli |
| P76136 | Two-component-system connector protein SafA; Regulatory protein b1500; Sensor associating factor A; | safA; yneN; b1500 JW1494.1; | NP_416017.1; | 65 | escherichia-coli |
| P0AFY2 | Protein SanA; | sanA; yeiF; b2144 JW2132; | NP_416649.1;YP_490383.1; | 239 | escherichia-coli |
| Q47622 | Peptide transport periplasmic protein SapA; | sapA; b1294 JW1287; | NP_415810.1;YP_489562.1; | 547 | escherichia-coli |
| P0AGH3 | Peptide transport system permease protein SapB; | sapB; b1293 JW1286; | NP_415809.1;YP_489561.1; | 321 | escherichia-coli |
| P0AGH5 | Peptide transport system permease protein SapC; | sapC; b1292 JW1285; | NP_415808.1;YP_489560.1; | 296 | escherichia-coli |
| P0AAH4 | Peptide transport system ATP-binding protein SapD; | sapD; b1291 JW1284; | NP_415807.1;YP_489559.1; | 330 | escherichia-coli |
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