| Identifier | Protein names | Gene names | Cross reference refseq | Length | Species |
| P0ACN7 | HTH-type transcriptional repressor CytR; | cytR; b3934 JW3905; | NP_418369.1;YP_491517.1; | 341 | escherichia-coli |
| P0AEB2 | D-alanyl-D-alanine carboxypeptidase DacA; DD-carboxypeptidase; DD-peptidase; EC 3.4.16.4; Beta-lactamase; EC 3.5.2.6; Penicillin-binding protein 5; PBP-5; | dacA; pfv; b0632 JW0627; | NP_415165.1;YP_488923.1; | 403 | escherichia-coli |
| P24228 | D-alanyl-D-alanine carboxypeptidase DacB; DD-carboxypeptidase; DD-peptidase; EC 3.4.16.4; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; EC 3.4.21.-; Penicillin-binding protein 4; PBP-4; | dacB; b3182 JW3149; | NP_417649.1;YP_491367.1; | 477 | escherichia-coli |
| P33013 | D-alanyl-D-alanine carboxypeptidase DacD; DD-carboxypeptidase; DD-peptidase; EC 3.4.16.4; Penicillin-binding protein 6b; PBP-6b; | dacD; phsE yeeC; b2010 JW5329; | NP_416514.4;YP_490252.1; | 388 | escherichia-coli |
| P08506 | D-alanyl-D-alanine carboxypeptidase DacC; DD-carboxypeptidase; DD-peptidase; EC 3.4.16.4; Penicillin-binding protein 6; PBP-6; | dacC; b0839 JW0823; | NP_415360.1;YP_489112.1; | 400 | escherichia-coli |
| P0A6J5 | D-amino acid dehydrogenase; EC 1.4.99.1; D-alanine dehydrogenase; | dadA; dadR; b1189 JW1178; | NP_415707.1;YP_489456.1; | 432 | escherichia-coli |
| P11557 | Cell division protein DamX; | damX; yhfB; b3388 JW3351; | NP_417847.1;YP_492044.1; | 428 | escherichia-coli |
| P0A6L2 | 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7; | dapA; b2478 JW2463; | NP_416973.1;YP_490706.1; | 292 | escherichia-coli |
| P04036 | 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8; | dapB; b0031 JW0029; | NP_414572.1;YP_488337.1; | 273 | escherichia-coli |
| P0A9D8 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; EC 2.3.1.117; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; | dapD; b0166 JW0161; | NP_414708.1;YP_488468.1; | 274 | escherichia-coli |
| P0AED7 | Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; EC 3.5.1.18; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; | dapE; msgB; b2472 JW2456; | NP_416967.1;YP_490699.1; | 375 | escherichia-coli |
| P0A6K1 | Diaminopimelate epimerase; DAP epimerase; EC 5.1.1.7; | dapF; b3809 JW5592; | NP_418254.2;YP_491632.1; | 274 | escherichia-coli |
| P0AFR2 | C4-dicarboxylic acid transporter DauA; Dicarboxylic acid uptake system A; | dauA; ychM; b1206 JW5189; | NP_415724.2;YP_489473.1; | 559 | escherichia-coli |
| P0ACF0 | DNA-binding protein HU-alpha; HU-2; NS2; | hupA; b4000 JW3964; | NP_418428.1;YP_491460.1; | 90 | escherichia-coli |
| P0ACF4 | DNA-binding protein HU-beta; HU-1; NS1; | hupB; hopD; b0440 JW0430; | NP_414974.1;YP_488732.1; | 90 | escherichia-coli |
| P21693 | ATP-dependent RNA helicase DbpA; EC 3.6.4.13; | dbpA; b1343 JW1337; | NP_415859.1;YP_489613.1; | 457 | escherichia-coli |
| P00861 | Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20; | lysA; b2838 JW2806; | NP_417315.1;YP_491043.1; | 420 | escherichia-coli |
| P28248 | Deoxycytidine triphosphate deaminase; dCTP deaminase; EC 3.5.4.13; | dcd; dus paxA; b2065 JW2050; | NP_416569.1;YP_490307.1; | 193 | escherichia-coli |
| P69908 | Glutamate decarboxylase alpha; GAD-alpha; EC 4.1.1.15; | gadA; gadS; b3517 JW3485; | NP_417974.1;YP_491918.1; | 466 | escherichia-coli |
| P69910 | Glutamate decarboxylase beta; GAD-beta; EC 4.1.1.15; | gadB; b1493 JW1488; | NP_416010.1;YP_489758.1; | 466 | escherichia-coli |
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