| Identifier | Protein names | Gene names | Cross reference refseq | Length | Species |
| P77463 | Probable D,D-dipeptide transport system permease protein DdpC; | ddpC; yddQ; b1485 JW1480; | NP_416002.1;YP_489750.1; | 298 | escherichia-coli |
| P77790 | D-alanyl-D-alanine dipeptidase; D-Ala-D-Ala dipeptidase; EC 3.4.13.22; | ddpX; vanX yddT; b1488 JW1483; | NP_416005.1;YP_489753.1; | 193 | escherichia-coli |
| P77622 | Probable D,D-dipeptide transport ATP-binding protein DdpF; | ddpF; yddO; b1483 JW1478; | NP_416000.1;YP_489748.1; | 308 | escherichia-coli |
| P77308 | Probable D,D-dipeptide transport system permease protein DdpB; | ddpB; yddR; b1486 JW1481; | NP_416003.1;YP_489751.1; | 340 | escherichia-coli |
| P0A9P6 | ATP-dependent RNA helicase DeaD; EC 3.6.4.13; Cold-shock DEAD box protein A; Translation factor W2; | deaD; csdA mssB rhlD; b3162 JW5531; | NP_417631.2;YP_491349.1; | 629 | escherichia-coli |
| P0ABP6 | Protein DedA; Protein DSG-1; | dedA; b2317 JW2314; | NP_416820.1;YP_490559.1; | 219 | escherichia-coli |
| P09549 | Cell division protein DedD; | dedD; b2314 JW5378; | NP_416817.2;YP_490556.1; | 220 | escherichia-coli |
| P0A6K3 | Peptide deformylase; PDF; EC 3.5.1.88; Polypeptide deformylase; | def; fms; b3287 JW3248; | NP_417745.1;YP_492146.1; | 169 | escherichia-coli |
| P0C0V0 | Periplasmic serine endoprotease DegP; EC 3.4.21.107; Heat shock protein DegP; Protease Do; | degP; htrA ptd; b0161 JW0157; | NP_414703.1;YP_488464.1; | 474 | escherichia-coli |
| P39099 | Periplasmic pH-dependent serine endoprotease DegQ; EC 3.4.21.107; Protease Do; | degQ; hhoA; b3234 JW3203; | NP_417701.1;YP_491418.1; | 455 | escherichia-coli |
| P0AEE3 | Serine endoprotease DegS; EC 3.4.21.107; Site-1 protease DegS; S1P protease DegS; Site-1-type intramembrane protease; | degS; hhoB htrH; b3235 JW3204; | NP_417702.1;YP_491419.1; | 355 | escherichia-coli |
| P0A6K6 | Phosphopentomutase; EC 5.4.2.7; Phosphodeoxyribomutase; | deoB; drm thyR; b4383 JW4346; | NP_418800.1;YP_492513.1; | 407 | escherichia-coli |
| P0A6L0 | Deoxyribose-phosphate aldolase; DERA; EC 4.1.2.4; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; | deoC; dra thyR; b4381 JW4344; | NP_418798.1;YP_492511.1; | 259 | escherichia-coli |
| P0ABP8 | Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1; Inosine phosphorylase; | deoD; pup; b4384 JW4347; | NP_418801.1;YP_492514.1; | 239 | escherichia-coli |
| P0ACK5 | Deoxyribose operon repressor; | deoR; nucR; b0840 JW0824; | NP_415361.1;YP_489113.1; | 252 | escherichia-coli |
| P0A6P5 | GTPase Der; Double era-like domain protein; GTP-binding protein EngA; | der; engA yfgK; b2511 JW5403; | NP_417006.2;YP_490739.1; | 490 | escherichia-coli |
| P0AEE5 | D-galactose-binding periplasmic protein; GBP; D-galactose/ D-glucose-binding protein; GGBP; | mglB; b2150 JW2137; | NP_416655.1;YP_490389.1; | 332 | escherichia-coli |
| Q6BF16 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.21; 2-oxo-3-deoxygalactonate 6-phosphate aldolase; 6-phospho-2-dehydro-3-deoxygalactonate aldolase; 6-phospho-2-keto-3-deoxygalactonate aldolase; KDPGal; | dgoA; yidU; b4477 JW5628; | YP_026238.1;YP_491742.1; | 205 | escherichia-coli |
| Q6BF17 | D-galactonate dehydratase; GalD; EC 4.2.1.6; | dgoD; yidU; b4478 JW5629; | YP_026237.1;YP_491743.1; | 382 | escherichia-coli |
| P31459 | 2-dehydro-3-deoxygalactonokinase; EC 2.7.1.58; 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase; | dgoK; yidV; b3693 JW3670; | NP_418148.1;YP_491741.1; | 292 | escherichia-coli |
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