| Identifier | Protein names | Gene names | Cross reference refseq | Length | Species |
| P18776 | Anaerobic dimethyl sulfoxide reductase chain B; DMSO reductase iron-sulfur subunit; | dmsB; b0895 JW0878; | NP_415415.1;YP_489167.1; | 205 | escherichia-coli |
| P03004 | Chromosomal replication initiator protein DnaA; | dnaA; b3702 JW3679; | NP_418157.1;YP_491733.1; | 467 | escherichia-coli |
| P0ACB0 | Replicative DNA helicase; EC 3.6.4.12; | dnaB; groP grpA; b4052 JW4012; | NP_418476.1;YP_492195.1; | 471 | escherichia-coli |
| P0AEF0 | DNA replication protein DnaC; | dnaC; dnaD; b4361 JW4325; | NP_418781.1;YP_492492.1; | 245 | escherichia-coli |
| P0ABS5 | DNA primase; EC 2.7.7.-; | dnaG; dnaP parB; b3066 JW3038; | NP_417538.1;YP_491258.1; | 581 | escherichia-coli |
| P08622 | Chaperone protein DnaJ; HSP40; Heat shock protein J; | dnaJ; groP; b0015 JW0014; | NP_414556.1;YP_488321.1; | 376 | escherichia-coli |
| P0A6Y8 | Chaperone protein DnaK; HSP70; Heat shock 70 kDa protein; Heat shock protein 70; | dnaK; groP grpF seg; b0014 JW0013; | NP_414555.1;YP_488320.1; | 638 | escherichia-coli |
| P0A8J2 | Primosomal protein 1; Primosomal protein I; | dnaT; b4362 JW4326; | NP_418782.1;YP_492493.1; | 179 | escherichia-coli |
| P15042 | DNA ligase; EC 6.5.1.2; Polydeoxyribonucleotide synthase [NAD(+)]; | ligA; dnaL lig lop pdeC; b2411 JW2403; | NP_416906.1;YP_490647.1; | 671 | escherichia-coli |
| P0AA89 | Diguanylate cyclase DosC; DGC; EC 2.7.7.65; Direct oxygen-sensing cyclase; | dosC; yddV; b1490 JW5241; | NP_416007.3;YP_489755.1; | 460 | escherichia-coli |
| P76129 | Oxygen sensor protein DosP; EC 3.1.4.52; Direct oxygen-sensing phosphodiesterase; Direct oxygen sensor protein; Ec DOS; Heme-regulated cyclic di-GMP phosphodiesterase,; | dosP; dos yddU; b1489 JW1484; | NP_416006.4;YP_489754.1; | 799 | escherichia-coli |
| P66899 | Diaminopropionate ammonia-lyase; DAPAL; EC 4.3.1.15; 2,3-diaminopropionate ammonia-lyase; Alpha,beta-diaminopropionate ammonia-lyase; Diaminopropionatase; | ygeX; b2871 JW2839; | NP_417347.1;YP_491073.1; | 398 | escherichia-coli |
| P0AEF4 | Transcriptional regulatory protein DpiA; Destabilizer of plasmid inheritance; | dpiA; citB criR mpdA; b0620 JW0612; | NP_415153.1;YP_488909.1; | 226 | escherichia-coli |
| P77510 | Sensor histidine kinase DpiB; EC 2.7.13.3; Sensor histidine kinase CitA; | dpiB; citA mpdB ybeP; b0619 JW0611; | NP_415152.1;YP_488908.1; | 552 | escherichia-coli |
| P00582 | DNA polymerase I; POL I; EC 2.7.7.7; | polA; resA; b3863 JW3835; | NP_418300.1;YP_491586.1; | 928 | escherichia-coli |
| P21189 | DNA polymerase II; Pol II; EC 2.7.7.7; | polB; dinA; b0060 JW0059; | NP_414602.1;YP_488366.1; | 783 | escherichia-coli |
| P10443 | DNA polymerase III subunit alpha; EC 2.7.7.7; | dnaE; polC; b0184 JW0179; | NP_414726.1;YP_488486.1; | 1160 | escherichia-coli |
| P0A988 | DNA polymerase III subunit beta; EC 2.7.7.7; Beta sliding clamp; Beta clamp; | dnaN; b3701 JW3678; | NP_418156.1;YP_491734.1; | 366 | escherichia-coli |
| P03007 | DNA polymerase III subunit epsilon; EC 2.7.7.7; | dnaQ; mutD; b0215 JW0205; | NP_414751.1;YP_488512.1; | 243 | escherichia-coli |
| P06710 | DNA polymerase III subunit tau; EC 2.7.7.7; DNA polymerase III subunit gamma; | dnaX; dnaZ dnaZX; b0470 JW0459; | NP_415003.1;YP_488761.1; | 643 | escherichia-coli |
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