| Identifier | Protein names | Gene names | Cross reference refseq | Length | Species |
| Q642C0 | DnaJ homolog subfamily C member 8; | Dnajc8; | NP_001013186.1; | 253 | rat |
| Q9JHY8 | DNA ligase 1; EC 6.5.1.1; DNA ligase I; Polydeoxyribonucleotide synthase [ATP] 1; | Lig1; | NULL | 918 | rat |
| O35303 | Dynamin-1-like protein; EC 3.6.5.5; Dynamin-like protein; | Dnm1l; Dlp1; | NP_446107.2;XP_006248778.1;XP_006248780.1;XP_006248785.1;XP_008767063.1;XP_008767064.1;XP_008767065.1; | 755 | rat |
| Q1LZ53 | DNA (cytosine-5)-methyltransferase 3A; Dnmt3a; EC 2.1.1.37; | Dnmt3a; | NP_001003957.1;NP_001003958.1;XP_008762753.1; | 908 | rat |
| Q1LZ50 | DNA (cytosine-5)-methyltransferase 3-like; | Dnmt3l; | NP_001003964.1; | 422 | rat |
| Q9Z330 | DNA (cytosine-5)-methyltransferase 1; Dnmt1; EC 2.1.1.37; DNA MTase RnoIP; M.RnoIP; DNA methyltransferase I; MCMT; | Dnmt1; | NULL | 1622 | rat |
| O35820 | 2'-deoxynucleoside 5'-phosphate N-hydrolase 1; EC 3.2.2.-; Deoxyribonucleoside 5'-monophosphate N-glycosidase; c-Myc-responsive protein Rcl; | Dnph1; Rcl; | NP_598209.1; | 163 | rat |
| Q9QZK8 | Deoxyribonuclease-2-alpha; EC 3.1.22.1; Acid DNase; Deoxyribonuclease II alpha; DNase II alpha; Lysosomal DNase II; | Dnase2; Dnase2a Dnl2; | NP_612548.1; | 350 | rat |
| Q9QZK9 | Deoxyribonuclease-2-beta; EC 3.1.22.1; DNase II-like acid DNase; DNase2-like acid DNase; Deoxyribonuclease II beta; DNase II beta; Endonuclease DLAD; | Dnase2b; Dlad; | NP_067696.1; | 356 | rat |
| Q2QDE7 | Deoxyribonuclease-1-like 1; EC 3.1.21.-; DNase X; Deoxyribonuclease I-like 1; DNase I-like 1; | Dnase1l1; | NP_001014245.2; | 312 | rat |
| O89107 | Deoxyribonuclease gamma; DNase gamma; EC 3.1.21.-; DNaseY; Deoxyribonuclease I-like 3; DNase I-like 3; | Dnase1l3; | NP_446359.1; | 310 | rat |
| P70611 | Double C2-like domain-containing protein alpha; Doc2-alpha; | Doc2a; | NP_075226.1;XP_006230397.1;XP_006230398.1;XP_006230399.1;XP_006230401.1;XP_006230402.1;XP_006230403.1;XP_008758140.1; | 403 | rat |
| P70610 | Double C2-like domain-containing protein beta; Doc2-beta; | Doc2b; | NP_112404.1; | 412 | rat |
| Q63603 | Dedicator of cytokinesis protein 9; Cdc42 guanine nucleotide exchange factor zizimin-1; Protein TRG; Fragment; | Dock9; Trg; | NULL | 720 | rat |
| Q5PPJ4 | Deoxyhypusine hydroxylase; DOHH; EC 1.14.99.29; Deoxyhypusine dioxygenase; Deoxyhypusine monooxygenase; | Dohh; | NP_001020177.1;XP_006240999.1;XP_006241000.1;XP_006241001.1; | 302 | rat |
| Q4QQV2 | Docking protein 1; Downstream of tyrosine kinase 1; | Dok1; | NP_001020587.1; | 480 | rat |
| B2RYG7 | Docking protein 3; Downstream of tyrosine kinase 3; | Dok3; | NP_001100806.1;XP_006253681.1; | 444 | rat |
| P80254 | D-dopachrome decarboxylase; EC 4.1.1.84; D-dopachrome tautomerase; | Ddt; | NP_077045.1; | 118 | rat |
| Q05754 | Dopamine beta-hydroxylase; EC 1.14.17.1; Dopamine beta-monooxygenase; [Cleaved into: Soluble dopamine beta-hydroxylase]; | Dbh; | NP_037290.2; | 620 | rat |
| Q6AYM4 | Protein DPCD; | Dpcd; | NP_001013927.1;XP_006231512.1; | 203 | rat |
