| Identifier | Protein names | Gene names | Cross reference refseq | Length | Species |
| P19511 | ATP synthase F(0) complex subunit B1, mitochondrial; ATP synthase subunit b; ATPase subunit b; | Atp5f1; Atp5f; | NP_599192.1;XP_003749420.1; | 256 | rat |
| Q71S46 | ATP synthase F(0) complex subunit C3, mitochondrial; ATP synthase lipid-binding protein; ATP synthase proteolipid P3; ATPase protein 9; ATPase subunit c; | Atp5g3; | NP_446208.1; | 142 | rat |
| Q5I0I4 | ATP synthase subunit s-like protein; | Atp5sl; | NP_001009705.1; | 254 | rat |
| Q505J9 | ATPase family AAA domain-containing protein 1; EC 3.6.1.3; Thorase; | Atad1; Npg6; | NP_001030174.1; | 361 | rat |
| Q3KRE0 | ATPase family AAA domain-containing protein 3; | Atad3; Atad3a; | NP_001030094.1; | 591 | rat |
| Q6MG11 | Alpha-tubulin N-acetyltransferase 1; Alpha-TAT; Alpha-TAT1; TAT; EC 2.3.1.108; Acetyltransferase mec-17 homolog; | Atat1; Mec17; | NP_997663.1; | 421 | rat |
| Q1M168 | Caytaxin; | Atcay; | NP_001035280.1; | 372 | rat |
| Q00969 | Cyclic AMP-dependent transcription factor ATF-2; cAMP-dependent transcription factor ATF-2; EC 2.3.1.48; Activating transcription factor 2; cAMP response element-binding protein CRE-BP1; | Atf2; | NP_112280.1; | 487 | rat |
| P29596 | Cyclic AMP-dependent transcription factor ATF-3; cAMP-dependent transcription factor ATF-3; Activating transcription factor 3; Liver regeneration factor 1; LRF-1; | Atf3; Lrf1; | NP_037044.1; | 181 | rat |
| Q9ES19 | Cyclic AMP-dependent transcription factor ATF-4; cAMP-dependent transcription factor ATF-4; Activating transcription factor 4; rATF-4; | Atf4; | NP_077379.1; | 347 | rat |
| Q6P788 | Cyclic AMP-dependent transcription factor ATF-5; cAMP-dependent transcription factor ATF-5; Activating transcription factor 5; Transcription factor ATFx; | Atf5; Atfx; | NP_758839.3;XP_006229042.1; | 281 | rat |
| G3V909 | Cyclic AMP-dependent transcription factor ATF-6 alpha; cAMP-dependent transcription factor ATF-6 alpha; Activating transcription factor 6 alpha; ATF6-alpha; [Cleaved into: Processed cyclic AMP-dependent transcription factor ATF-6 alpha]; | Atf6; | NP_001100666.1; | 656 | rat |
| Q2TBJ5 | Ubiquitin-like protein ATG12; Autophagy-related protein 12; APG12-like; | Atg12; Apg12l; | NP_001033584.1; | 141 | rat |
| Q6AZ50 | Ubiquitin-like-conjugating enzyme ATG3; EC 6.3.2.-; Autophagy-related protein 3; APG3-like; Preconditioning-inducible gene 1 protein; | Atg3; Apg3l; | NP_599221.1; | 314 | rat |
| Q3MQ06 | Autophagy protein 5; | Atg5; | NULL | 275 | rat |
| Q641Y5 | Ubiquitin-like modifier-activating enzyme ATG7; ATG12-activating enzyme E1 ATG7; Autophagy-related protein 7; APG7-like; | Atg7; Apg7l; | NP_001012097.1;XP_006237095.1; | 698 | rat |
| Q5FWU3 | Autophagy-related protein 9A; APG9-like 1; | Atg9a; Apg9l1; | NP_001014240.1;XP_006245309.1;XP_008765484.1;XP_008765485.1;XP_008765486.1;XP_008765487.1;XP_008765488.1; | 839 | rat |
| Q6AY69 | Autophagy-related protein 101; | Atg101; | NP_001007660.2;NP_001258043.1;XP_006242386.1; | 218 | rat |
| Q03344 | ATPase inhibitor, mitochondrial; Inhibitor of F(1)F(o)-ATPase; IF(1); IF1; | Atpif1; Atpi If1; | NP_037047.2; | 107 | rat |
| Q4FZU4 | ADAMTS-like protein 4; ADAMTSL-4; | Adamtsl4; | NP_001029184.1; | 1030 | rat |
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